CDS

Accession Number TCMCG016C02248
gbkey CDS
Protein Id OMP03365.1
Location complement(join(52375..52665,52787..52987,53091..53231,53360..53590,53911..54510,55000..55187,56317..56395))
Organism Corchorus capsularis
locus_tag CCACVL1_02462

Protein

Length 576aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215142; BioSample:SAMN03290679;
db_source AWWV01006072.1
Definition RNA polymerase sigma-70 [Corchorus capsularis]
Locus_tag CCACVL1_02462

EGGNOG-MAPPER Annotation

COG_category K
Description Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko03021        [VIEW IN KEGG]
KEGG_ko ko:K03086        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs GO:0000988        [VIEW IN EMBL-EBI]
GO:0000990        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006351        [VIEW IN EMBL-EBI]
GO:0006352        [VIEW IN EMBL-EBI]
GO:0006355        [VIEW IN EMBL-EBI]
GO:0006399        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009314        [VIEW IN EMBL-EBI]
GO:0009416        [VIEW IN EMBL-EBI]
GO:0009507        [VIEW IN EMBL-EBI]
GO:0009536        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009639        [VIEW IN EMBL-EBI]
GO:0009657        [VIEW IN EMBL-EBI]
GO:0009658        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010114        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016987        [VIEW IN EMBL-EBI]
GO:0018130        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019438        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0032774        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034645        [VIEW IN EMBL-EBI]
GO:0034654        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043254        [VIEW IN EMBL-EBI]
GO:0044087        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044271        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051128        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0071214        [VIEW IN EMBL-EBI]
GO:0071478        [VIEW IN EMBL-EBI]
GO:0071482        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097659        [VIEW IN EMBL-EBI]
GO:0104004        [VIEW IN EMBL-EBI]
GO:0140110        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901362        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1903506        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2000142        [VIEW IN EMBL-EBI]
GO:2001141        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGTCTTGTTTATTGCCACAGTTCAAGTGCCAACCTGACACTTTCTCTATCCAATTTAGAACTCACCACTCACACCATTCAAAACATAAAGAATCTATATGCTTCCGGACACAATGTGTTTTATCTACCTCTTCTCCGTCAACATCAACTGCAACAACTGCCGTGCTTGATCTAGAGAAGCTAAGATTACCATCTTTCGAAGCTCAGCCAAATTCAGTTGTGGCAGATAGACCATGGTATAGAGGGGCAACTGGTCCACCCTCAGAGGCAAGCTTTGGAGCATCTTTAACTACAGAAAACCTTCTTAAGAGTGATGATGCTGTAATTGCTTCTGCTGCTGCTGAAGCAGTAGCTCTTGCGCGTGCAGCTGTTAAGGTTGCAAAGGATGCTGCCTTGATGGCTAAGAGCTTCAATTCATCAAAAATAGAAATGAAATCTACAGTCTCATCTGCAACTGATACTCTCACATCCAAGTGGGCTCTGTTTACAGAAGCAGAGAGGGCTGGTATTGTTGGAGATTCTCCCACAAATGAAAGTGATGAAGATGATTCTGAGGAAAAATCCACAACAGAATCTGATAAACTAGAGCCCACAAATGAAGAACTTGAATACCTTGAGGAGCAATTATCCAGAAGTATAGCAGTGAGGTCAAGGCGCCAAACTGAACGAAAAGCCAAAAGAACAAGAGCAGCAGAAAAGGCTTCTTCCAATGCCGTTTCTCTGAGGTCGGGTTCTAACAGCAGAAAGAAGCGTGGTGCTTTACAAGAAGTAGACTATTCCGATCCATTACGTTACTTGAGAGGGACTACCAGTACTTCTAGGCTTCTTACGGCTAATGAAGAACTTGAGTTGTCGGAAGGAATACAGGACCTACTGAAACTGGAGAGGCTCGAGGAGGAGCTTAGAGAACGATGTGGAGGACAGCCAACCTTTTCACAGTGGGCTGCTGCTGCTGGTGTCGATCAGAAGACACTGCGGAGACGCTTAAATTATGGCATACTTTGCAAGGACAAAATGATTAAAAGCAACATACGGCTTGTTATTTCAATTGCAAAAAATTATCAGGGAGCTGGAATGAATCTCCAAGATCTTGTTCAGGAAGGATGCCGAGGCCTTGTGAGAGGTGCTGAGAAGTTTGATGCTTCTAAAGGTTTCAAGTTCTCAACTTATGCACACTGGTGGATTAAGCAAGCTGTACGGAAGTCTCTGTCTGATCAGTCAAGGACAATTCGCTTGCCTTTTCACATGGTTGAGGCAACATATAGAGTAAAGGAGGCTAAAAAGCAGTTGTACAGTGAAAATGGAAGACATCCTGACAATGAAGAAGTTGCAGAGGCAACAGGGCTCTCAATGAAGAGGCTCCATGCTGTTCTTCTCACGCCCAAGGCTCCTAGATCTCTTGATCAGAAGATTGGGATCAACCAAAACCTCAAACCCTCGGAAGTTATTGCAGATCCTGAAGCAGACACAGCTGAGGATATCCTACTCAAGCAGTTCATGAAGAAGGATCTGGAGAAGGTTTTGGACAGTCTTGGTCAAAGAGAGAGGCAAGTAATCAGATGGAGGTTTGGAATGGAGGATGGAAGGATGAAAACTTTGCAAGAAATCGGTGAATTAATGGGTGTAAGCAGAGAAAGAATCCGGCAAATCGAGTCATGTGCCTTCCGGAAGATGAAGAACAAAAAGAGAACAAAAAATTTGCAGCAATATTTGGTTTCATATGCCTCATAA
Protein:  
MSCLLPQFKCQPDTFSIQFRTHHSHHSKHKESICFRTQCVLSTSSPSTSTATTAVLDLEKLRLPSFEAQPNSVVADRPWYRGATGPPSEASFGASLTTENLLKSDDAVIASAAAEAVALARAAVKVAKDAALMAKSFNSSKIEMKSTVSSATDTLTSKWALFTEAERAGIVGDSPTNESDEDDSEEKSTTESDKLEPTNEELEYLEEQLSRSIAVRSRRQTERKAKRTRAAEKASSNAVSLRSGSNSRKKRGALQEVDYSDPLRYLRGTTSTSRLLTANEELELSEGIQDLLKLERLEEELRERCGGQPTFSQWAAAAGVDQKTLRRRLNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAKKQLYSENGRHPDNEEVAEATGLSMKRLHAVLLTPKAPRSLDQKIGINQNLKPSEVIADPEADTAEDILLKQFMKKDLEKVLDSLGQRERQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIESCAFRKMKNKKRTKNLQQYLVSYAS